chore: update @flue/cli and @flue/runtime to 0.11.0 (#31401)

* chore: update @flue/cli and @flue/runtime to 0.11.0

* chore: track .flue/pnpm-lock.yaml in git

* chore: add account_id to flue wrangler.jsonc

* chore: add v3 migration to rename DO classes to Flue-prefixed names for flue 0.11.0

Author: mvvmm

.flue/package.json

@@ -11,10 +11,10 @@
 	},
 	"dependencies": {
 		"@cloudflare/codemode": "0.3.8",
-		"@cloudflare/shell": "0.3.8",
+		"@cloudflare/shell": "0.3.9",
 		"@cloudflare/workers-types": "4.20260526.1",
-		"@flue/cli": "0.9.1",
-		"@flue/runtime": "0.9.1",
+		"@flue/cli": "0.11.0",
+		"@flue/runtime": "0.11.0",
 		"agents": "0.14.1",
 		"valibot": "1.4.1",
 		"wrangler": "4.97.0"