Hundreds of agent skills for medical research, including protocol design, data analysis, evidence insights, and academic writing.
Unix, R and python tools for genomics and data science
cBioPortal for Cancer Genomics
DELLY2: Structural variant discovery by integrated paired-end and split-read analysis
Summarize, Analyze and Visualize MAF files from TCGA or in-house studies.
A community-maintained repository of cancer clinical knowledge bases and databases focused on cancer variants.
fast sample-swap and relatedness checks on BAMs/CRAMs/VCFs/GVCFs... "like damn that is one smart wine guy"
Personalized Genomics and Proteomics. Main diet: Ensembl, side dishes: SNPs
Chromosome visualization for the web
Personal Cancer Genome Reporter (PCGR)
A visualization grammar and GPU-accelerated toolkit for genomic data
Haplotype-aware CNV analysis from single-cell RNA-seq, ATAC-seq, and multiome
An ensemble approach to accurately detect somatic mutations using SomaticSeq
Lollipop-style mutation diagrams for annotating genetic variations.
SigProfilerExtractor allows de novo extraction of mutational signatures from data generated in a matrix format. The tool identifies the number of operative mutational signatures, their activities in each sample, and the probability for each signature to cause a specific mutation type in a cancer sample. The tool makes use of SigProfilerMatrixGen…
Training and evaluating a variational autoencoder for pan-cancer gene expression data
Microassembly based somatic variant caller for NGS data
microsatellite instability detection using tumor only or paired tumor-normal data
What you need to process the Quarterly DepMap-Omics releases from Terra
To associate your repository with the cancer-genomics topic, visit your repo's landing page and select "manage topics."
